Showing posts with label human migrations. Show all posts
Showing posts with label human migrations. Show all posts

Thursday, October 19, 2023

Links: Volcanic Underworld, First Americans, Billion Year Old 3D Microfossils

Readings over the past few weeks.

1) Taking the First Steps Into a Newly Formed Volcanic Underworld: Maya Wei- Haas describes a fascinating landscape on the Canary Islands in the Atlantic Ocean. Volcanic eruptions and the transport of lava via underground tubes has formed a subterranean world of stacked lava tunnels and caves. Their mapping is ongoing and scientists hope to understand not just the details of volcanism and the hazards it poses, but also how life can colonize such nascent surfaces, powered by nutrients from minerals. As one of the scientists remarks- "lava tubes is a rare chance to watch an evolving ecosystem from time zero".

2) It looks like the 23ky old human footprints at White Sands are solid: What is the earliest securely dated evidence of people in the America's? In 2021, there was a report of human footprints from an ancient lake in New Mexico. Since the footprints themselves could not be dated, seeds of an aquatic plant that were found in the same layer were carbon dated to about 23 thousand  years ago. That result was greeted with caution. The main concern was that the seeds may have taken up much older lake water containing less of the radioactive isotope C14. This may have made the dated material look older than it actually was. 

Now, there has been more work on the geochronology of the site using two more independent lines of dating. The results agree with the previously estimated date of 23 thousand  years. ArcheoThoughts summarizes the dating methodologies. 

3) Discovery of oldest 3D-preserved microorganisms: Before organisms evolved the ability to build hard skeletons, their remains have been preserved as impressions on soft sediment or as chemical degradation products recognizable by a light carbon isotope signal. Stefanie Terp reports on a discovery of 3D preservation of microorganisms from a mine in Ukraine. They are 1.5 billion years old! 

Scanning Electron Microscopy reveals the filamentous structure of these creatures. They are most likely a variety of fungi. Groundwater in the granite environment in which they lived was saturated with aluminum and silica. The microorganisms were covered and entombed in micrometer thin layers of aluminum silicate, perfectly preserving their delicate structure.

Wednesday, December 28, 2022

Holiday Readings: Ancient Amputations, First Americans, Fossil Molluscs

Wishing my readers a very Happy New Year! I hope these readings will be to your liking.

1) Can ancient amputations tell us about the care systems of our ancestors? Paleoanthropologist John Hawks surveys the fossil record of ancient humans for signs of severed limbs due to trauma or disease. He also presents cases of limb loss in other primates and offers a perspective on what all this can tell us about past social systems. 

"Both humans and nonhuman primates show us that survival and life after extreme injuries happen under varied circumstances. Bioarchaeologists tend to highlight severe injuries, which stand out from the more subtle patterns of osteological signs of disease that can be understood only across large samples of skeletons. But such individual stories rarely yield unambiguous interpretations".

2) Finding the First Americans. Anthropologist Jennifer Raff brings together often conflicting genetic and archaeological data on this ever vexing and complicated question of how the Americas were populated. 

3) Finding Molluscs. This podcast (with transcript) is part of an excellent continuing series of earth science and paleontology podcasts by Mongabay India. In this episode, host Sahana Ghosh talks with paleoecologist Devapriya Chattopadhyay on her research on fossil molluscs. Dr. Chattopadhyay uses these creatures to track ancient environmental conditions and ecology. She also speaks on the urgent need for India to create a national fossil repository and museum which will help preserve our deep history for future generations.

Saturday, January 22, 2022

Links: Tonga Volcano, Old Carbon, Indian Palaeontology

 Sharing these readings.

1) My first impression of the massive Volcanic eruption in Tonga was the mushrooming ash plume seen in a satellite imagery. Over the days more sensors have captured additional information about this event. When it is safe, geologists will travel to the site to sample the volcanic debris and subject it to detailed textural and geochemical analysis to piece together the journey of magma from its source to its explosive entry on the surface.

Scientific American has a good summary - Why the Tonga Eruption Was So Violent, And What to expect next

2) Debate is an integral part of scientific progress. One common platform to engage in a critique and discussion with your colleagues is the Comment and Reply section in scientific journals. You can submit a note explaining the issues you have about a paper, and it is published along with the author’s response. I am across a good example of this in the journal Science. The topic was the recent announcement of roughly 22,000 year old human footprints from Lake Otero, New Mexico. These dates suggest that humans  were present in North America during the Last Glacial Maximum, a few thousand years earlier than what other data has indicated.

The debate revolves around the accuracy of dating these footprints. Of particular interest here is the problems one can encounter with carbon dating a sample. Living beings have amounts of the radioactive isotope carbon 14 in them in equilibrium with the atmosphere. After death, the amount of this isotope in organic tissue starts decreasing due to natural radioactive decay of carbon 14. Knowing the decay rate and measuring its proportion in the organic material gives us estimates of how old the sample is. But what if the source of carbon is old? For example,  it is from very old groundwater or from the bottom of a lake which is not exchanging gases with the atmosphere? The carbon 14 values in such a réservoir will be very low due to ongoing decay and no replenishment of newly formed carbon 14 from the atmosphere. If organisms consume carbon from such a reservoir (which contains carbon 12 and carbon 13 too) and then are sampled , they will be estimated to be older than they really are. 

The Comment and Reply focuses on this problematic aspect of recognising and correcting for the ‘reservoir age’ of carbon 14. Of pointed importance too is the context and location of collected samples. 

A very informative debate on the nuances of sampling and assigning ages. 

Comment- Évidence of humans in North America during the last glacial maximum

Reply- Evidence of humans in North America during the last glacial maximum

3) I have posted about this topic before. Thé challenges and triumphs of Indian palaeontology very well described by Kamala Thiagarajan in this recent article. 

Why India’s Fossil Wealth Has Remained Hidden

Previously, Sreelatha Menon had written about the lack of importance palaeontology is accorded in the earth sciences and the devastation this neglect is inflicting to palaeontology education, awareness, and research. Her essay is worth reading too; What do you do when palaeontology is itself endangered in India?

Monday, August 16, 2021

Readings: Mars Geology, Human Diversity, India Rock Art

 A few interesting readings:

1) NASA's Mars Perseverence Rover is hard at work. It has an amazing collection of geochemical instruments which are probing the surface with the aim of categorizing the mineralogy and chemistry of surface materials. The hope is to pinpoint regions which could have hosted microbial life.

Signs of Life on Mars: NASA's Perseverance Rover Begins the Hunt 

2) How are Andaman Islanders closer to Swedes than to Africans?

Razib Khan explain in this informative essay on patterns of human diversity and what it tells us about human migrations and population admixture over the past 100,000 years.

Out of Africa's midlife crisis-on bottlenecks, crashes and what diversity really looks like: How are Andaman Islanders closer to Swedes than to Africans?

3) On the Aravalli ranges quartzite rock faces in the state of Haryana is art created as long as 20,000 years ago. The locals always knew about it, but the Archeological Survey has just begun studying it in detail. 28 ancient sites have been found. I hope all of them get protection immediately. Smithsonian Magazine has a summary describing these finds. The final photo of rock art in the article depicts mounted warriors. Are they mounted on donkeys/mules or horses? Curious to know what readers think. I am leaning towards them being donkeys or mules.

These Millennia-Old Cave Paintings May Be Among India’s Oldest. 

Saturday, December 5, 2020

Readings: Myanmar Geology, Holocene Human Populations, Indian Archaeology

Some interesting readings over the past few weeks:

1) Myanmar Geology- Oblique convergence, where plates converge or collide at an angle, has produced some stunning geological features in Myanmar. Lon Abbot and Terri Cook sail down the Irrawaddy River describing vestiges of volcanic arcs, strike slip faults, en echelon sedimentary basins, and fold mountains, with a fair bit thrown in about the architecture and cultural history of the country.

Sailing Through A Subduction Zone.

2) Genetics And Human Evolution- Razib Khan compiles a nice list of the many aspects of human evolution and especially Holocene population history that has been brought out by recent work in genomics and ancient DNA.

What I'm Thankful To Know About Genetics And History In 2020.

3) Indian Archaeology- A sort of historiography of the field of Indian archaeology from Colonial times to today. Dilip Menon writes about the push and pull of ideas of conquest, politics, and nationalism that influence Indian archaeology research and narratives.

How Archaeology Has Shaped India’s Imagination Of Itself. 

Friday, October 23, 2020

Readings: Darwin's Atolls, Pre Toba Humans, Herbivore Diets And Ecology

Posting some interesting readings:

1) A beautiful theory has been undone by ugly facts. How do coral atolls, those shimmering ring shaped islands set against the blue ocean, form? Charles Darwin had famously reasoned that coral colonies begin growing on the slopes of volcanoes. Eventually the volcanoes sink into the ocean, while the coral keep growing upwards. The central area where the volcano existed becomes a deep lagoon, surrounding by a ring of coral reefs. But he just assumed that the present day corals atolls are growing on a volcanic foundation. Actually, most are not. Tropical region reefs and atolls rest on an earlier generation of coral and limestone. These in turn have grown on an even earlier layer of coral growth and so on through the past few million years. 

Darwin at that time didn't know that the climate over the past 2-3 million years had shifted periodically between glacial and inter-glacial phases resulting in sea level changes, and how these repeated sea-level fluctuations can create environments where corals grow during a sea level rise or later dissolve during a sea level fall to form a karst landscape. This jagged uneven surface in turn becomes the foundation for a new generation of corals. A new detailed study of the Pacific Ocean and Indian Ocean reefs demonstrates this elegantly.

Paper- The Origin of Modern Atolls: Challenging Darwin's Deeply Ingrained Theory.

Write up - Darwin's theory about coral reef atolls is fatally flawed.

2) Did Homo sapiens enter India prior to the devastating Toba eruption that took place about seventy four thousand years ago or after? This question is of interest in elucidating the timelines and dispersal routes of our species from Africa. Homo sapiens had reached Australia by around 60,000 years ago with India being one obvious migration path.  There are no skeletal human fossils from this time period in India and stone tools have been variously interpreted as belonging either to Homo sapiens or an earlier archaic human. There were few accurately dated sites from the time period of 80,000 years ago to 50,000 years ago. Now, some new work from the Son Valley, Madhya Pradesh, shows long term human occupation in north India from pre Toba eruption times. The layers containing stone tools span from about 79,000 years ago to 65,000 thousand years ago. The tools resemble those from the Middle Stone Age of Africa, Arabia and Australia and are interpreted to have been the handiwork of Homo sapiens

Paper- Human occupation of northern India spans the Toba super-eruption ~74,000 years ago.

3) The ecologic context of the evolution of our genus Homo is of great interest. A recent study focuses on using carbon isotopes to tease out dietary shifts in herbivore fauna living in East Africa in the late Pliocene to Early Pleistocene. Analysis of herbivore teeth from 3.6 million years ago to 1.05 million years ago reveals a shift from C3 derived food (woody vegetation) to C4 derived food (grasses), first around 2.7 million years ago and again later around 2.1 million years ago.  Woodlands were giving way to more open savanna, a change that coincides with the evolution of Paranthropus and Homo

Paper- Dietary trends in herbivores from the Shungura Formation, southwestern Ethiopia.

Write up - Researchers use fossilized teeth to reveal dietary shifts in ancient herbivores and hominins.

 

Sunday, September 20, 2020

Readings: Measuring Sea Levels, Human Evolution, Elements

 Some interesting articles from the past few weeks:

1) What is global mean sea level? What is relative sea level? Is sea level rising or falling along the India coastline? Science writer Shreya Dasgupta explains how scientists measure sea level change with special reference to the Indian coast.

The Surprisingly Difficult Task of Measuring Sea-Level Rise Around India

2) A long thought human ancestor that turns out to be a contemporary.. a cousin perhaps. Multiple human species coexisted across African landscapes in the Mid Pleistocene, around 300,000 to 200,000 years ago, just when skeletal features that we recognize as 'modern' were evolving.  New fossil finds supplemented by genetics is enriching our understanding of human origins. Fine summary article by Katarina Zimmer.

Genetics Steps In to Help Tell the Story of Human Origins

3) What is an element? From Lavoisier to Mendelev to recent times, Philip Ball traces the contentious issue of pinning down what exactly an element is? 

What is an element?

Tuesday, February 4, 2020

Articles: Herculaneum, Magma Ascent, Early Human Migration, Indian Cheetah

Some interesting articles on a variety of topics that I came across in the past few weeks.

1) What Really Happened at Herculaneum?

This off course refers to the violent eruption of Mount Vesuvias in 79 A.D.  A new study analyses the way bone and soft tissue react to extreme heat and proposes that the people found dead at Herculaneum did not vaporize but died of asphyxiation.

2)  The long wait and rapid rise of deep magma.

Magma can reside in deep chambers at the boundary between the crust and mantle for thousands of years before rising to the surface rapidly in a matter of a few days.

3) Neanderthal Genes Hint at Much Earlier Human Migration From Africa.

It was thought that 60,000 years ago modern humans migrated out of Africa and interbred with Neanderthals beginning around 40,000 years ago. As a result all non-Africans carry some Neanderthal DNA. A new DNA analysis technique now suggests that an earlier wave of humans migrated out of Africa some 200,000 years ago and interbred with Neanderthals. Their descendants back migrated to Africa carrying with them the legacy of this earlier mating. As a result, Africans too carry a genetic legacy of Neanderthals.

4) Introduce the cheetah, with caution and guidelines.

There is a proposal to introduce the African cheetah into the Indian landscape. Neha Sinha argues that a grasslands policy needs to be put in place first.
 

Tuesday, February 6, 2018

Some Thoughts On The Middle Paleolithic Stone Tools From India Story

Early Middle Palaeolithic culture in India around 385–172 ka reframes Out of Africa models - Kumar Akhilesh, Shanti Pappu, Haresh M. Rajapara, Yanni Gunnell, Anil D. Shukla and Ashok K. Singhvi

From a site in Tamil Nadu, South India, stone tool types named Levallois were dated to be 385 ka -172 ka (ka-thousand years). Levallois tools are made by striking a stone core to produce smaller flakes which are then put to various uses.  They were more versatile than the older clunkier hand axes. Previous estimates for the arrival of this technology in India was thought to be around 125 ka or later, introduced by migrating Homo sapiens.

So, who made these older Levallois tools? The recent finding from Morocco of Homo sapiens like fossils dated to be older than 300 ka has prompted many to interpret this finding as evidence of an early arrival of Homo sapiens into south Asia.

Some thoughts-

1) this discovery has put a rare spotlight on the Indian hominin record. The paucity of hominin skeletal fossils and a lack of a rigorous chronology for deposits and tools have meant that the Indian record, if not ignored, has received less attention. This study has established a robust chronological framework of the sedimentary sequence in which these tools are found. A change from older Acheulean style tools to Levallois styles is documented within this dated sequence. Finding a trend, something changing or being replaced by something else, at one locality and within one sedimentary sequence is rare at hominin sites across the world. I think this make it more a compelling story than an isolated find of some stone tools.

2) I've noticed that some media article headlines and discussions in social media are suggesting that the "Out of Africa" theory needs to be reassessed. Well, what exactly do you mean by 'Out of Africa'? The original and popular Out Of Africa theory proposes that Homo sapiens originated in Africa around 200 ka. Then, 60ka-50ka ago these modern Africans migrated and settled the globe, replacing earlier archaic human populations. But, it is not news that there have been many 'Out of Africa's'.  By that I mean there have been many dispersals of humans out of Africa. Early archaic Homo dispersals occurred by 1.8 mya. The ancestors of Neanderthals and Denisovans left Africa by 1 mya to 700 ka ago.  There is genetic, fossil and archaeological evidence for a Homo sapiens migration around 65-50 ka ago. There is also evidence of an earlier migration of Homo sapiens (dated to ~120 ka) into the Levant and possibly into south Asia as well. An older Homo sapiens fossil dated to 185 ka has been found recently in Israel. Now, this discovery of  advanced tool technology has been interpreted by some to indicate an even earlier migration of Homo sapiens into India.

To me, the bigger evolving story is that Homo sapiens are getting older and older, originating earlier that 385 ka! That they might have dispersed into Asia soon after is less of a surprise. Migrations out of Africa seem to have occurred again and again, and so another at around 385 ka doesn't seem to be an extraordinary event. There would have been back migrations into Africa as well. I suspect that the recent finding of anatomically modern humans in Morocco dated to more than 300 ka has shaped the media narrative of this stone tool finding into an 'early migration into India' story.

How would have these stone tools been interpreted without supportive fossil evidence that Homo sapiens existing by 385 ka?  There always was an alternative hypothesis that proposed that evolution of complex behavior and associated advances in tool technology took place independently in disparate human populations residing in Africa, Europe and Asia.  Aspects of 'modern' anatomy and behavior might have developed multiple times in different places.  In this context, the hominin skull dated to around 236 ka found in the Narmada valley, Central India, is intriguing. Given its antiquity, the reasonable interpretation is that it represents a population descended from an earlier Homo erectus migration into India. Yet, it has a mix of archaic and derived (modern) features. It's estimated cranial capacity is comparable to modern humans.  Is it an example of  parallel evolution of 'modern' traits outside Africa?  Or, does it represent a hybrid population formed by the mixing of archaic hominins and Homo sapiens?

Skeptics like Michael Petraglia have pointed out that the technological transition seen in India may be a local invention of technology and not due to migration of a new population carrying advanced tools. Changing environmental conditions may have spurred similar inventions in different parts of the world.

3) One point to note is whether these earlier archaics and Homo sapiens living outside Africa contributed ancestry to today's people. Some recent genetic analyses suggests that all non-Africans are descended from Homo sapiens that dispersed from Africa around 80 ka -50 ka ago. These people did mix with archaic hominins in Europe and Asia but the degree of admixture is low. We contain about 2-4% Neanderthal and/or Denisovan genes.  If this is true, if earlier people migrating from Africa did not leave much of a genetic legacy in us, then the original 'Out of Africa' model still has some relevance.

Sunday, November 19, 2017

Geology And Homo Sapiens Habitats Pleistocene Indian Subcontinent

Came across an interesting passage from this review paper:

Environments and Cultural Change in the Indian Subcontinent: Implications for the Dispersal of Homo sapiens in the Late Pleistocene - by James Blinkhorn and Michael D. Petraglia

Yet beyond relief, the geological structure of the Indian subcontinent plays another important role in patterns of habitability in the region. The analysis of the structure of geological basins within the Indian subcontinent led Korisettar (2007) to the conclusion that the Purana basins exerted a strong influence on hominin dispersals and occupation history. Although direct precipitation within the Purana basins is lower than other regions of the subcontinent, perennial supplies of freshwater are available because of spring activity from aquifers that deliver water resources from regions that receivemuch higher monsoonal precipitation.As a result of reliable water resources and abundant raw materials for stone tool manufacture, these geological basins are thought to have acted as refugia not only for hominin populations but also for varied flora and fauna (Korisettar 2007).

The importance of such Purana basins for providing refugia is well exemplified by the recent study of fauna from the Billasurgum caves, located within the Cuddapah Basin. Here, excavations revealed the first stratified sequence to document patterns of faunal occupation spanning the late Middle Pleistocene to Late Pleistocene (Roberts et al. 2014). This study illustrated the long-term continuity of large-bodied fauna within South Asia with only a single taxon of twenty-four identified as having gone extinct across the subcontinent (Roberts et al. 2014).


The "Purana" basins are Proterozoic in age. They are scattered all over Peninsular India. A common lithology is silica cemented sandstone or quartzite which forms prominent hill ranges, ridges and escarpments with ledges, overhangs and caves. These hard quartzites would have been one source of raw material for stone tools.  The rocks are also fractured and networks of pervasive cracks allow the storage and movement of groundwater.

The map (from a different paper) below shows the distribution of Middle Paleolithic sites (red dots) in India, Arabia and Eastern Africa. I have outlined in black (very approximate!) the location of three Purana basins. V stands for Vindhyan, C for Cuddapah and B&K for Bhima and Kaladgi.

 Modified from Huw S. Groucutt et.al. 2015

This paper have lots of information about climate change, ecology and stone tool record found in India. The authors discuss the Late Acheulean (130k - 100 K) ,  Middle  Paleolithic (94k - 34 K) and the Late Paleolithic ( < 45 K). These terms refer to particular styles of stone tool manufacture.

The India skeletal fossil record is very poor. However, based on comparisons with Middle Paleolithic of Africa and Homo sapiens fossils and tool associations in SE Asia and Australia, the authors are in favor of a wave of  Homo sapiens migrating into India as early or perhaps a little earlier than 100 k ago. This was followed by a later wave around 50 k years ago.  Do changes in cultural style and tool use point to changing populations.. with an intrusive population replacing an earlier one?.. that is an intriguing question. Some recent genetic work suggests that people from these earlier migrations died out without leaving a genetic legacy in us. All non African humans have descended from migrants who left Africa between 50K-80K years ago.  I had summarized these results in an earlier post on human population continuity in India.

See also other papers from this special volume of Current Anthropology on Human Colonization of Asia In the Late Pleistocene

Open Access.

Tuesday, August 15, 2017

Links: Human Evolution

Sharing links to interesting articles I have read in the past few months. Better understanding of human evolution is being driven by a) New fossil finds giving valuable insights into morphologic variation and geography, b) DNA analysis of both modern and extinct populations giving us an understanding of genealogical relationships and migration histories and c) better absolute dating of fossils that constraint evolutionary scenarios.

1) What Are Our Best Clues To The Evolution Of Fire-Making? Anthropologist Barbara J King examines the physical evidence of fire making by ancient hominins and presents speculations on how natural fires may have played a role in hominin cultural evolution.

2) A world map of Neanderthal and Denisovan ancestry in modern humans- Phys.Org. " There are certain classes of genes that modern humans inherited from the archaic humans with whom they interbred, which may have helped the modern humans to adapt to the new environments in which they arrived," says senior author David Reich, a geneticist at Harvard Medical School and the Broad Institute. "On the flip side, there was negative selection to systematically remove ancestry that may have been problematic from modern humans. We can document this removal over the 40,000 years since these admixtures occurred."

3) Three new discoveries in a month rock our African origins- Prof. John Hawks on new fossil dating of hominin fossils from Morocco and evidence from archaic DNA from S. Africa that complicates the African story of the origins of Homo sapiens. The scenario suggested here is that Homo sapiens did not evolve due to changes in a population which was genetically isolated from other Pleistocene African hominin groups. Rather there was a pan-African gene flow. This is multi-regionalism within Africa.

4) Out of North Africa- Dienekes argues the exact opposite.. that the Morocco fossils imply that Homo sapiens evolved in north Africa from a reproductively isolated population and that multi-regionalism is wrong.

5) Features of the Grecian ape raise questions about early hominins- Did the hominin clade evolve in Europe and not Africa? Prof. John Hawk's critique of a recent paper suggesting that view. He cautions that convergent evolution is common among different hominin lineages. A single feature, such as the mandible used in this paper, cannot indicate relationships.

6) Early modern humans in Sumatra before the Toba eruption- Steve Drury in Earth Pages summarizes new evidence that indicates early ( more than 70,000 years ago) migration of Homo sapiens into SE Asia. .." Together with the dating of the earliest Australians the Sumatran evidence is at odds with the view, widely held by palaeoanthropologists, that the ‘Out of Africa’ exodus began by crossing the Straits of Bab el Mandab between 74 and 58 ka when global sea-level fell markedly during marine oxygen-isotope Stage 4 (MIS4). A problem with that hypothesis has been that climatic and ecological conditions in southern Asia during MIS4 were unfavourable. But is seems that modern humans were already there and capable of adapting to both the climate shift and to the devastation undoubtedly caused by Toba."

Tuesday, November 29, 2016

Human Evolution: The Paleolithic In The Indian Subcontinent

Came across this article by anthropologist Sheila Mishra on the Paleolithic of the Indian subcontinent and its significance in understanding human evolution.

The Indian Subcontinent is one of the areas occupied by hominins since Early Pleistocene times. The Lower Palaeolithic in the Indian Subcontinent is exclusively Acheulian. This Acheulian is similiar to the African Acheulian and has been labeled "Large Flake Acheulian" (LFA). The Middle Palaeolithic in the Indian Subcontinent is a poorly defined entity and the author has suggested that this phase should be considered the final phase of the Large Flake Acheulian from which it evolved. Microblade technology has recently been shown to be older than 45 Ka in the Indian subcontinent and is certainly made by modern humans as it has a continuity from this time until the bronze age. Presently, the nature of the transition from Acheulian technology to Microblade technology is not well understood as few sites have been dated to the relevant time period.

The continuity of the Lower Palaeolithic in the Indian Subcontinent is due to its ecological features. The Indian Subcontinent extends from approximately 8°-30° N which would normally encompass equatorial, tropical and temperate latitudinal zones. However, the influence of the monsoonal climate and sheltering effect of the Himalayan mountains results in a sub-tropical grassland vegetation extending both northwards and southwards of its normal distribution. Rainfall, rather than temperature, is the most important ecological variable which has a longitudinal rather than latitudinal variation. Thus, the Indian Subcontinent has a more homogenous environment than any comparable landmass and one eminently suitable for hominins. In contrast, the African climate zones are strongly latitudinal in distribution. The Indian Subcontinent during the Early and Middle Pleistocene has close connections with Sundaland. The fauna associated with Homo erectus in Java is derived from the Indian Pinjor faunas. During low sea levels the area of land exposed in the Sunda shelf is equal in size to the Indian Subcontinent. Sundaland has an important buffering effect on the Indian Subcontinent, with favourable conditions for Hominins in Sundaland coinciding with unfavourable ones in the Indian Subcontinent.


She interprets the ecology and tool record as suggesting that Homo erectus evolved in the India-Sundaland region and not in Africa. This scenario implies there was a migration of Homo erectus into Africa from Asia by 1.8 million years ago or so.  She points out that a number of African mammal species appear in the Indian Siwaliks (Himalaya foothills)  by 3-2.5 million years ago and so presumably an ancestral species (Australopithecus? early Homo?)  may have migrated out of Africa at that time. There have been recent announcements of putative 2.6 million year old stone tools from the Siwaliks, but their significance is still up for debate. And given the paucity of skeletal remains in India, her theory is going to be a hard sell.

There is  also a really good description of the geological context in which Paleolithic stone tools are found in the Indian subcontinent. They have been often described as "surface" sites but Mishra points out that they have been eroding from fluvial sediments. Volcanism, sedimentation and tectonics in the African rift valley and parts of Java lead to conditions favoring both burial and preservation and later exhumation of fossils and tools. The situation in India is different. Since Mio-Pliocene most of Peninsuslar India has been an erosive landscape with sedimentation occurring in a few fluvial systems with a depositional regime. Thick fluvial successions are rare. Preservation potential on the Indian landscape was low. The implication is that India may have had a larger population of hominins through the Pleistocene than the rarity of remains suggest.  Caves are the other context in which hominin fossils have been found in Africa, Europe and Asia. Have caves been adequately explored in India?

A very interesting article. Open Access.

Saturday, September 24, 2016

No Population Continuity Between Pre Toba And Extant Humans In India

A few years ago stone tools were discovered in the Jurreru Valley region of Kurnool district, South India, in sediment stratigraphically below a volcanic ash layer dated to around seventy four thousand years ago. This was the deposit of the famous Toba eruption. Michael Petraglia, an archaeologist based at the University of Oxford, England, suggested that these tools were made by Homo sapiens. This would mean that our species had first migrated out of Africa and into India perhaps as early as hundred thousand years during the Marine Isotope Stage 5 interglacial phase when ecological corridors may have opened up between Africa, Arabia and the Indian subcontinent. This is much before the more commonly accepted dates of around fifty to sixty thousands years ago. Other scientists objected and argued that the tools were made by an earlier species of archaic Homo, perhaps descendants of Homo erectus who had migrated to India more than a million years ago. The various theories of the dispersal of Homo sapiens from Africa has been summarized well recently in an article by Huw. S Groucutt and colleagues.

The earliest unequivocal skeletal evidence of the presence of anatomically modern humans in the Indian subcontinent comes from Sri Lanka where these remains have been dated to be around thirty five thousand years old. They represent humans from the later wave of the out of Africa migrations.

A related question was left dangling. If these tools were made by people from an earlier migration of Homo sapiens, then is there population continuity between those older migrants and living Indians?  Did later migrants mix with the earlier inhabitants or did the earlier human populations go extinct without leaving a genetic legacy in us.

There were other hints of the presence of an older wave of Homo sapiens migration into India. The Indian Early to Mid Pleistocene hominin skeletal record is quite poor with examples only from the Narmada Valley at Hathnora and Nethankari . At the latter site, a humerus interpreted to represent a "short and stocky" early Homo sapiens has been found associated with delicate bone implements. The remains may be around seventy five thousand years old or even older. At Hathnora, two clavicles and a partial 9th rib was recovered from a layer of fluvial sediment. The materials are thought to be about one hundred and fifty thousand years old and have been interpreted to be an archaic Homo sapiens. What is the margin of error on these dates? Could they be a little younger and represent the early MIS 5 phase migration from Africa around one hundred to one hundred and twenty five thousand years ago? This population seems to have persisted for several tens of thousands of  years as is evidenced by the younger remains at Nethankari.

There is evidence in the form of tools  as well as skeletal material found in Israel, the Arabian Peninsula and China, that indicate that anatomically modern humans did migrate out of Africa as early as a hundred thousand years ago.  A series of DNA studies of global human populations published a few days ago seems to say that people from these earlier migrations died out without contributing ancestry to extant humans. The three studies say that all non-African humans have descended from a single wave of migration  that took place between fifty thousand and eighty thousand years ago.

The scientists, A.R. Sankhyan and colleagues, working on the remains of the short and stocky Narmada Valley hominin had suggested that this population may have contributed ancestry to later short bodied people of South Asia, for example the Andamanese tribes. This scenario now looks untenable. These older (putative) Homo sapiens  in India and elsewhere died out without leaving a genetic trace.

The exception to these findings seems to be in Papua New Guinea. One study finds that 2% of the genome of present day Papuans originated from an earlier expansion  of modern humans out of Africa.

Carl Zimmer has written a good summary of the results.

Here are the links to the papers -

1)  Genomic analyses inform on migration events during the peopling of Eurasia
2) The Simons Genome Diversity Project: 300 genomes from 142 diverse populations
3) A genomic history of Aboriginal Australia

Why didn't people from the two separate waves of modern human migrations mate? The answer likely is because they never met. These older Homo sapiens populations went extinct before the new settlers came. I say this because recent genetic work has shown that one almost inevitable outcome of the meeting of two peoples, however different they may be, is sexual intercourse. When modern humans left Africa fifty-sixty thousand years ago they met and interbreed with Neanderthals and Denisovans, two older hominin groups whose ancestors had left Africa about half a million years ago.

Consider also what happened much later in the Holocene. The end of last ice age and the advent of agriculture saw population growth and the migration and mixing of people. Many of these populations had diverged and remained relatively isolated for more than twenty thousand years, accumulating significant cultural, linguistic and physical difference between them. Yet, the result of the meeting of these people was mostly not the genetic disappearance of one group, but admixture and the formation of modern groups with multiple streams of ancestry.

Today's Europeans contain ancestry from three different groups. A small fraction from earlier resident hunter gatherers and the more substantial fraction from Near East farmers and from Central Asian steppe pastoralists. When Europeans began colonizing the Americas, the native populations suffered immensely from disease and subjugation. But there was also genetic admixture. Native Americans today, both from South and North Americas, contain a noticeable amount of  European and African ancestry.

In the Indian context multiple events of mixing in the Holocene took place between residents (the Ancestral South Indians) and migrants from the Eurasian regions (the Ancestral North Indians). Additions layers of ancestry to the Indian melting pot (but common more in the eastern parts of the country) were contributed by migration of the Tibeto-Burman and the Austroasiatic people from the north east.

Why did the older group of Homo sapiens go extinct? According to Dr Pagani, one of the scientists involved in the first study I listed above “They may have not been technologically advanced, living in small groups,”... “Maybe it was easy for a major later wave that was more successful to wipe them out.”

Or as I suggested, they went extinct before the new settlers arrived. Living in small isolated populations leaves people vulnerable to disease and environmental catastrophe. One such event could have been the Toba eruption which had considerable environmental impact in South Asia. Could that have played a role in the demise of older Homo sapiens groups in Asia?  It would be interesting to see if there is archaeological evidence of an overlap between the two groups of modern humans anywhere.

Mallick, S., Li, H., Lipson, M., Mathieson, I., Gymrek, M., Racimo, F., Zhao, M., Chennagiri, N., Nordenfelt, S., Tandon, A., Skoglund, P., Lazaridis, I., Sankararaman, S., Fu, Q., Rohland, N., Renaud, G., Erlich, Y., Willems, T., Gallo, C., Spence, J., Song, Y., Poletti, G., Balloux, F., van Driem, G., de Knijff, P., Romero, I., Jha, A., Behar, D., Bravi, C., Capelli, C., Hervig, T., Moreno-Estrada, A., Posukh, O., Balanovska, E., Balanovsky, O., Karachanak-Yankova, S., Sahakyan, H., Toncheva, D., Yepiskoposyan, L., Tyler-Smith, C., Xue, Y., Abdullah, M., Ruiz-Linares, A., Beall, C., Di Rienzo, A., Jeong, C., Starikovskaya, E., Metspalu, E., Parik, J., Villems, R., Henn, B., Hodoglugil, U., Mahley, R., Sajantila, A., Stamatoyannopoulos, G., Wee, J., Khusainova, R., Khusnutdinova, E., Litvinov, S., Ayodo, G., Comas, D., Hammer, M., Kivisild, T., Klitz, W., Winkler, C., Labuda, D., Bamshad, M., Jorde, L., Tishkoff, S., Watkins, W., Metspalu, M., Dryomov, S., Sukernik, R., Singh, L., Thangaraj, K., Pääbo, S., Kelso, J., Patterson, N., & Reich, D. (2016). The Simons Genome Diversity Project: 300 genomes from 142 diverse populations Nature DOI: 10.1038/nature18964

Groucutt, H., Petraglia, M., Bailey, G., Scerri, E., Parton, A., Clark-Balzan, L., Jennings, R., Lewis, L., Blinkhorn, J., Drake, N., Breeze, P., Inglis, R., Devès, M., Meredith-Williams, M., Boivin, N., Thomas, M., & Scally, A. (2015).               Rethinking the dispersal of
             
              out of Africa
             Evolutionary Anthropology: Issues, News, and Reviews, 24 (4), 149-164 DOI: 10.1002/evan.21455

Saturday, July 30, 2016

New Ancestor Of Man And Other Rants About Media Reports

I am ashamed to admit this, but these days I just shrug away the various instances of poor science reporting I notice in the Indian media. But enough outrage has been building up over a couple of  particularly bad misrepresentations of scientific findings to prompt this rant.

 1) Indian Scientists Find New Ancestor Of Man

One shudders with embarrassment at this jingoistic hyperbole. The study is an international collaboration. Why the chest beating?

The article in Deccan Herald on July 26 by Kalyan Ray completely misrepresents the evolutionary story of Homo sapiens. Here are the sentences which go badly wrong -

"Andaman’s Jarawas and Onges are descendants of a completely new family of early men unknown to science so far"..

"The discovery has the potential to open up a new window in the history of human evolution by suggesting that Homo heidelbergensis—the first group of men who came out of Africa—had given rise to multiple lineages and not just the Neanderthal and the Denisovan—the two known branches from which all modern human beings have evolved".

The writer is suggesting the modern humans evolved entirely from Neanderthals and Denisovans outside Africa and that this new research is showing that the Andamanese are descendants of a yet third branch of humans based outside Africa.

This picture given by Kalyan Ray is false. Take a look at the hominin family tree presented in the research paper.


Source: Genomic analysis of Andamanese provides insights into ancient human migration into Asia and adaptation

It presents our current understanding of human evolution and migration and admixing events between different branches of hominins. Modern humans migrating out of Africa about 60 thousand years ago met and admixed with the Neanderthals and Denisovans who were branches of an earlier wave of human migration out of Africa. This earlier wave of migration may have taken place about half a million years ago. This admixture between archaic and modern humans resulted in all living non -Africans having  2%-4% Neanderthal ancestry with additional Denisovan ancestry more common in Melanesians.  Now, this study is proposing that another unknown extinct hominid, a possible third diverged population from those earlier migrations, contributed a small amount of ancestry to south Asians. The Andamanese may be taken as an approximate proxy of the original modern humans who entered the Indian subcontinent from Africa since after diverging from a common South Asian population they have admixed less with other modern humans.

Another quibble is the sentence "Hominids are ancestors of the great apes and humans". Well, hominids is a grouping that includes both extinct and living great apes and humans. So yes, some extinct hominid would have been our ancestor, but modern humans are hominids too. As an aside, to confuse matters further, Hominin are the group that includes the extinct and living members of only the human family, excluding the chimpanzee, gorilla and orang-utans.

2) Before The Pharoah: Fresh Evidence Should Make Us Question Earlier Views Of Indus Valley Civilization

This piece which appeared in the Times of India on June 6 is referring to a paper about the link between Holocene monsoon record and the evolution of Harappan civilization. The authors also suggest a revision of the chronology of the various Harappan cultural stages.  Here is their proposed chronology.This is based mainly on the chronology proposed earlier by G.L Possehl. The authors of this study augment  that with new dates from two samples.

"The successive cultural levels at Bhirrana, as deciphered from archeological artefacts along with these 14C ages, are Pre-Harappan Hakra phase (~9.5–8 ka BP), Early Harappan (~8–6.5 ka BP), Early mature Harappan (~6.5–5 ka BP) and mature Harappan (~5–2.8 ka BP)"

And here is the conventional chronology

"Conventionally the Harappan cultural levels have been classified into 1) an Early Ravi Phase (~5.7–4.8 ka BP), 2) Transitional Kot Diji phase (~4.8–4.6 ka BP), 3) Mature phase (~4.6–3.9 ka BP) and 4) Late declining (painted Grey Ware) phase (3.9–3.3 ka BP). This chronology is based on more than 100 14C dates from the site of Harappa and nearby localities".

Here is the chronology Mr. Mehta presents:


The first line in the introduction section of the research paper makes it clear that all dates are presented in BP (Before Present). Yet Nalin Mehta in his article bungles up and without applying the necessary correction presents the chronology as representing dates in BC. The difference is 2000 years! For example, 5000 BP is 3000 BC.

Another big error he makes is lumping all the Harappan cultural stages into one mature phase spanning 8000 -2000 BC ! This gives an erroneous view of the evolution of Harappan society. The mature phase represents urbanization. The earlier cultural stages were rural antecedents represented by farming and pastoral communities and even earlier human settlements in this area. By terming the entire time span of Harappan culture as belonging to the mature phase, Mr Mehta gives an impression that Harappan cities were as old as 8000 BC. This is certainly not the case. This new study revises the mature phase of the Harappan culture from the accepted ~2600 BC-2700 BC (4700 BP) to ~ 3000 BC (5000 BP). This proposed revision at one cultural site should not be taken to mean that dates for cities like Harappa, Mohenjodaro, Dholavira will suddenly be changed to 3000 BC. Their chronology needs to be ascertained independently. As of now, large number of C14 and thermoluminescence dates have secured the age of these cities to be around 2700 BC or so.

One has to be careful with terminology. Mr Mehta uses dates as old as 8000 BP (wrongly presenting them as 8000 BC) to imply that the Harappan civilization is older than the Paraoahs of Egypt. Such a comparison is meaningless. These earlier dates represent a rural society. No doubt there was population and cultural continuity of these earlier people with the later urban phase, but you can say the same thing about pre-urban Egyptian and Sumerian cultures evolving into a full fledged urban civilization. There was a long pre-urban phase from 5-6 millenium BC in Eygpt and Sumer (synchronous to the Indus region) with central political consolidation and urbanism by around 3100 BC in Egypt when the first dynastic kings known as the Pharaohs seized power. In Sumer, the transition from rural to urban took place even earlier with cities like Uruk gaining prominence well before 3500 BC.

The differently named cultural stages of the Indus valley carry a specific meaning  in terms of societal complexity and cultural changes. You can't just call everything mature Harappan and then claim that the finding requires some kind of a fundamental rethink of Harappan society. 

As it happens, the dates presented in the paper that Mehta is ga-ga about are not new. Archaeologists have been aware of the alternate chronology presented by G.L Possehl for about 15 years now! In that sense there is nothing revolutionary about the chronology presented in this paper.

..rant over.

Sunday, May 8, 2016

Review- Human Dispersals Out Of Africa

Human Dispersal Out of Africa: A Lasting Debate -Saioa López, Lucy van Dorp and Garrett Hellenthal

Here is a good review of the fossil, archaeological and genetic data that has spawned various theories of how anatomically modern humans dispersed out of Africa and colonized the world.

The graphic below summarizes the dispersal scenarios-


Source: Lopez et al. 2016

One big lacunae is the lack of a Pleistocene skeletal record in the Indian subcontinent.

Tuesday, April 5, 2016

Peopling Of The Americas- Rapid Settlement And Substantial Lineage Extinction Upon European Contact

Here is the full paper : Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas

The exact timing, route, and process of the initial peopling of the Americas remains uncertain despite much research. Archaeological evidence indicates the presence of humans as far as southern Chile by 14.6 thousand years ago (ka), shortly after the Pleistocene ice sheets blocking access from eastern Beringia began to retreat. Genetic estimates of the timing and route of entry have been constrained by the lack of suitable calibration points and low genetic diversity of Native Americans. We sequenced 92 whole mitochondrial genomes from pre-Columbian South American skeletons dating from 8.6 to 0.5 ka, allowing a detailed, temporally calibrated reconstruction of the peopling of the Americas in a Bayesian coalescent analysis. The data suggest that a small population entered the Americas via a coastal route around 16.0 ka, following previous isolation in eastern Beringia for ~2.4 to 9 thousand years after separation from eastern Siberian populations. Following a rapid movement throughout the Americas, limited gene flow in South America resulted in a marked phylogeographic structure of populations, which persisted through time. All of the ancient mitochondrial lineages detected in this study were absent from modern data sets, suggesting a high extinction rate. To investigate this further, we applied a novel principal components multiple logistic regression test to Bayesian serial coalescent simulations. The analysis supported a scenario in which European colonization caused a substantial loss of pre-Columbian lineages.

Several points of interest come to mind.

a) Separation with Siberian common ancestors took place about 24 thousand years ago, followed by a long period of isolation in Beringia (see Fig.).


The founder lineages then settled the America's quite rapidly beginning around 16 thousand years. Sites in Chile show human habitation by 14 thousand years.

b) The much talked about Clovis culture were not the first Americans.

c) There was a demographic collapse among the Native American populations. Charles Mann's 1491 gives quite a sweeping account of both native and Spanish eye witness accounts of the wiping out of entire tribes and communities due to Old World diseases. This paper backs that up using genetics. A comparison of ancient DNA with present day Native American DNA shows that extensive extinction of mitochondrial lineages took place.  In plain language, entire tribes were wiped out to be replaced  much later by natives migrating from some other place, although the authors caution some of the discontinuity of lineages could be because  modern diversity may have been undersampled.  The data for ancient DNA comes principally from the western coast of South America which had large Native American population centers.   Lowland populations went extinct more. Highland populations were less affected. Perhaps population contact was more in the lowlands and diseases like malaria more prevalent in the warmer climes?

Wednesday, March 23, 2016

In Search Of Early Humans In India

I attended a talk yesterday by Prof. S. N Rajguru on the evidence for early hominins in India. This was part of the C. Meenakshi Memorial Lecture series hosted by the Bhandarkar Oriental Research Institute in Pune.

Prof. Rajguru is an acknowledged expert on Quaternary geology and paleoclimates of the Indian subcontinent and the talk followed the contours of his expertise.

Here is the abstract which was given to us:

In Search of an "Early Man" (>2.5 Ma yrs to around 50 Ka yrs) in India

Recent progress in absolute dating methods, in understanding palaeo-landscape of India in light of behavior of monsoonal rainfall in the last 10 million years (Ma), fluctuations in sea level on 7500 km, long coastline of India and the rise of Himalayas and Tibetan plateau from 1000 m during the Late Miocene (around 15 Ma yrs ago) to around 3000 m during early Pleistocene(~1 Ma yrs ago) have added new information on chronology and environment of "Early Man" (hominin) in India.

It is now know that the Indian monsoon is at least 10 Ma old and was fairly strong till 2 Ma yrs. It started fluctuating (strong, moderate, weak) during the Pleistocene (2.5 Ma-10 Ka). The Indian monsoon was relatively strong to moderate during early Pleistocene (2.5 Ma - 0.7 Ma), moderate to weak during middle Pleistocene (0.7 Ma- 130 Ka) and weak during the late Pleistocene (130 Ka- 10 Ka).

Owing to changes in the strength of monsoonal rainfall the landscape of India also responded dramatically. The sea level went down by 100 to 150 m below the present sea level around 18 Ka BP (before present) and was high around 125 Ka BP by 5 to 7 m in tectonically stable part of coastal India. The peninsular rivers also responded to climatic changes in terms of strong erosion and excess deposition. The Himalaya was affected by tectonic movements and by glaical and interglacial climates which were part of global climatic changes during the Pleistocene.

These environmental changes did affect the biological world including 'hominins' in India.  It appears that early man was present in the foothills of the Himalayas in NW India around 2.6 Ma yrs BP and around 1.7 Ma BP in the coastal parts near Chennai in Tamil  Nadu. These two important discoveries in the form of stone tools and bones with cut marks made by early man raise doubts about the 'out of Africa' migration of early man in Asia during the early Pleistocene.

We are not certain who was the maker of stone tools like choppers around 2.6 Ma yrs or little  earlier in the foothills of the Himalayas near Chandigarh. Most likely he belongs to "Australopithicus" group of hominin. On the other hand 'Homo erectus' was responsible for making Acheulian (Lower Paleolithic) artifacts, like handaxes, cleavers, etc., around Chennai during the early Pleistocene (~ 1.7 Ma).

There is a long gap between 'Homo erectus' (~1.7 Ma, with brain capacity of 800 to 1100 cc) and modern man or Homo sapien sapiens (with brain capacity of 1100-1300cc) who had his origin in Africa 200,000 yrs BP.

In Indian context, there are large number of Lower Paleolithic sites well preserved in varieties of environment during the middle Pleistocene (0.7 Ma- 130 Ka). There is a cultural change in the form of stone tools consisting of small size scrapers, points, choppers, etc., made on flakes removed from cryptocrystalline minerals like chert and chalcedony. It is as yet not clear whether the maker of Middle Pleistocene artifacts was 'Modern Man' who arrived in India via West Asia, or he still belongs to advanced form of ' Homo erectus'. Excepting a single fossil skull of hominin, dated to around 250 Ka yrs in the Central Narmada Basin, we do not have any other human fossil data of early late Pleistocene (~ 100 Ka BP).  Thus, the search for early man, though shrouded in scientific controversy, will continue in future in old Himalayas, warm peninsula and in humid coastal strip of India.

One quibble is the comment that evidence of putative 2.6 million year old stone tools from the Siwalik foothills of the Himalaya raises doubt about the 'Out of Africa' migration of early humans into Asia in early Pleistocene. I really don't see how this is so. Unless you are claiming that bipedalism and hominins originated in Asia, a position for which there is not an iota of evidence, all this discovery does (and the finding is still being debated) is deepen the timeline of the earliest migration of hominins from Africa into Asia.
I came across the same argument in a more detailed article about the Siwalik stone tools and scratch marks on bovine bones discovery in Outlook magazine. That article went even further and stated that this 2.6 million year old tools and bone marking may tell us "when we started looking and behaving more like Homo sapiens rather than apes" Huh!... How so? How does an unconfirmed find of possible Early Pleistocene tools in India  signal the evolution  of Homo sapiens from ape like ancestors? The mere presence of these archaic tools can't be a signal. If so, the same reasoning applies to the Pleistocene tool record in Europe and China too. So, such a broad overreaching claim explains nothing.  It is just sensational journalism by Outlook magazine.

I don't want to dwell on this issue too much since it was not the thrust of Prof.  Rajguru's talk. Instead, he gave quite an engrossing presentation with lots of pictures of the various field sites where stone tools ranging in age from 1.7 million years to 50 thousand years or so have been found. He spoke in detail about the paleo-environments and it is clear that humans in India occupied a wide range of landscapes and ecology during the Pleistocene. There were some awesome sites in Ladakh in the Himalayas, a few sites along the Gujarat coast associated with mid-late Pleistocene aeolian carbonate sand made up of Miliolite shells (great cross bedding), and a very interesting site closer to Pune. This was in a laterite cave in a sea cliff overlooking the Arabian sea near the town of Guhaghar. Tools provisionally dated to about a hundred thousand years old or so have been found there.

What did come out of this talk was some of the limitations faced by researchers in India. The first is the lack of a skeletal record of humans. We have just a few skeletal fragments from the Narmada valley. I asked Prof. Rajguru about this lack of bones. He suggested that the African record is richer in bones because of preservation in volcanic ash and fine river muds and sands. In contrast, most of the sites where stone tools have been found in India are surface sites where the preservation potential of skeletal material is poor. That does point the way to a future program of more focused search for bones in the Pleistocene sediments across India. The second problem is establishing absolute chronology. Dating methods are very expensive and until recently Indian researchers could afford to date only the occasional sample. Or, they had to rely on collaboration with western (and Australian) researchers. Hopefully this will change in the future.

Prof. Rajguru is a field geologist. He must be in this seventies now but his enthusiasm for field work is still undiminished. He kept stressing the importance of understanding the geology, stratigraphy and paleo-ecology of human habitation sites to fully understand the significance and variability of human occupation in India in terms of past climates and landscapes. Even without skeletal material one can make a useful contribution toward understanding human evolution....

having said that.. we do need to find more bones!

Tuesday, January 12, 2016

5300 Year Old Iceman's Bacteria Genome Does Not Support Out Of India Theory

The genome of bacterium Helicobacter pylori found in  the stomach of the 5300 year old European mummy named the "Iceman" shows close similarity with Helicobacter pylori strains found in the gut of north Indians. This finding published in Science has been used as evidence to support the Out of India theory, which proposes that the Aryans and the Indo-European language family originated in India. One branch of it spread into Europe, diverging into various IE languages, while the branch which remained in India became the common  ancestor of Iranian and Sanskrit. A later migration into Iran founded the Iranian branch of the IE family.

Here is a tweet by Subhash Kak, one of the proponents of the Out of India theory.



He and others who use this finding of the bacterial genome to support this scenario are wrong.

Here's why.

Their scenario requires the European strain of Helicobacter pylori to have been derived from the Indian strain. That means people from India migrated  into Europe in the Neolithic-Early Bronze Age around five to six thousand years ago carrying with them the Indian bacterial strain which then evolved into the European variety found in the Iceman. This interpretation is demonstrably wrong. The analysis of the bacterial genomes clearly shows that the Indian strain shares ancestry with the European strain

" The resulting linked co-ancestry matrix (Fig. 4) showed that the ancient H. pylori genome shares high levels of ancestry with Indian hpAsia2 strains (Fig. 4, green boxes), but even higher co-ancestry with most European hpEurope strains".....

... "Furthermore, our co-ancestry results indicate that the Iceman’s strain belonged to a prehistoric European branch of hpAsia2 that is different from the modern hpAsia2 population from northern India".

In plain English what this mean is that the European strain has not evolved directly from the Indian strain.  Rather, the European strain and the Indian strain share an Asian common ancestor. This is clearly seen in the phylogeny (evolutionary relationship) presented in the supplementary materials of the  paper (page 50 of 88). See the image below.


Source: Supplementary Materials Maixner et al. 2016

The red arrow points to the common ancestor of the Iceman and Indian strains. The Iceman's strain and the Indian strain are sister lineages. The European strain is not derived from the Indian strain. The most sensible explanation of this finding is that from a common Asian source in the Anatolian / Near East region this bacteria spread into Europe and into India with the Neolithic expansion of farmers. It then diverged into the respective strains seen in the Iceman and in extant Indians. In Europe, this Asian derived strain then mixed with an African variety due to a migration in more recent times.

No evidence can be  found for a bronze age Out of India migration of people and languages from this study of the Iceman's bacterial genome.

Friday, September 18, 2015

Harappa DNA- What Could It Tell Us About Holocene Peopling Of India

Hindustan Times carried a report a few days back on the recovery of DNA from Harappa age skeletons at Rakhigarhi village in Haryana.

What could ancient DNA tell us about the Holocene population composition of  India?

Background:

Recent genetic studies of  Indian populations  shows that Indians are a admixture of two ancient populations, the Ancestral South Indians (ASI) and  the Ancestral  North Indians (ANI). The general understanding is  that ASI has been resident  in India  since the Pleistocene, while ANI ancestry -which is related to Central and West Eurasians- was introduced in India  at various times during the Holocene. ANI and ASI are deeply divergent populations having separated from each other as early as 30 thousand to 40 thousand years ago.

ANI ancestry in Indian populations decreases along a north to south cline and from upper caste to lower caste.  Indo-European speakers have a larger component of  ANI ancestry than Dravidian speakers with North Indian upper castes showing the highest ANI ancestry.

Scenarios:

Lets assume that a representative sample of Harappa society is eventually collected. What could Harappan DNA tell us?

1) There is an absence of ANI in Harappa DNA. Harappans are unmixed ASI. This would indicate that Harappans were not Vedic Aryans. It will also have implications on how farming was introduced to the Indus valley.

2) Harappans have some ANI ancestry i.e they are a mix of ANI and ASI . This would not automatically mean that the ANI ancestry was contributed by Vedic Aryans. ANI is likely a fairly diverse group i.e. different groups of ANI after separating from West Eurasians may have  migrated into South Asia at different times in the Holocene. There is a possibility that ANI ancestry in Harappans reflects the migration of farmers (Dravidian speakers?)  from West Eurasia in the earlier part of Holocene. Moorjani et al's study indicates waves of admixture of ANI and ASI,  with middle and upper castes showing multiple layers of ANI ancestry and northern Indo European language groups shows younger admixtures dates than southern Dravidian speaking groups. These have been dated to a late and post Harappan period, although the authors say that their methods may have missed earlier admixture events. I am predicting that any ANI component in Harappans will be taken by many people as confirmation that the Vedic Aryans built the Harappan civilization.

3) Harappans have some ANI ancestry with markers suggestive of Indo-Aryan people ; One example could be the proposed West Eurasian origin -13910 C>T mutation for lactase persistence which in India  shows a northwest to southeast declining pattern. This would favor the scenario that the Vedic Aryans were a part of the Harappan civilization.  And there could be other markers typical to Indo-Aryans. Needless to say, such a finding will upset linguistic reconstructions of Indo-Aryan origins (proto-Sanskrit) thought to be not earlier than 2000 B.C. 

4) Harappans are entirely ANI. This would mean that ANI co-existed alongside ASI in the Indian subcontinent but remained genetically distinct for thousands for years until admixture in late/post Harappan times.

5) Update: November 21 2015- [ Harappans are an ASI-Austro Asiatic mix, likely speaking a Munda related language. This is a wild card entry and I am basing it on a linguistic hypothesis that there are loans words indicative of a northwest India geography in the early parts of the Rig-Ved that have phonetic similarities to Munda languages. This language substrate has been termed "Para-Munda" as it occurs really on the western most fringe of the occurrence of Munda language distribution in India, and based on its linguistic properties seems to be an early branch of the Austro-Asiatic language family.  This suggests that Indo-Aryans came in contact with resident Austro Asiatic language speakers in the Greater Punjab and Gangetic plains. Genetic work on Austro Asiatic language communities suggest a somewhat later entry (~ 2300 B.C) into East India from a Laos homeland, but Harappans just might represent an early wave of migrants from the east.]

We may get clear cut answers only when we can resolve with confidence the different layers of ANI ancestry.

I'm leaning towards Scenario (2). 

Tuesday, August 25, 2015

Theories Of Dispersal Of Homo Sapiens From Africa

Huw S. Groucutt and colleagues in Evolutionary Anthropology lay out the evolving story of the dispersal of Homo sapiens from Africa. The review brings together fossil, genetic  and archaeological data which now strongly leans towards a scenario of multiple migrations of Homo sapiens out of Africa beginning more  than hundred thousand years ago. These migrations followed ecological  windows of opportunity.  Interglacial phases resulted in wetter climate in the Levant and Arabia and may have made viable migration routes following either coastal contours or more interior passages towards the rest of Europe and Asia.

An Excerpt:

A variety of dispersal models (Table 1) address the period between the widely accepted African origin of Homo sapiens by around 200-150 ka and the arrival of our species at the margins of the Old World, including Australia, Siberia, and northwest Europe, by 50-40 ka.1–4 The evolutionary, demographic, and cultural processes between these milestones remain unclear, but a variety of recent studies add important new data.Whereas earlier models focused on assessing the geographical origins of our species based on fossil data, more recent approaches seek to combine fossil, genetic, archeological, and paleoenvironmental data to illuminate the nuances of dispersal into Asia (Table 1). These models emphasize different hypotheses concerning factors such as when dispersals began, how many occurred and which routes were followed. Recent models have largely fallen into two broad categories, emphasizing Marine Isotope  Stage (MIS) 5 (early onset dispersal model) or post-MIS 5 (late dispersal model) time frames (Table 1). This, however, is not a rigid dichotomy. For example, models proposing an early onset to dispersal are consistent with subsequent post-MIS 5 dispersals having also played an important role in patterns of human diversity.

The map below shows the distribution of Middle Paleolithic sites plotted on a modeled precipitation map of the last interglacial (MIS 5). The abundance of sites in the interior of Arabia speaks against a strictly coastal migration route into India. The interior of Arabia during humid phases would have been a mix of grasslands and riparian corridors offering potential dispersal routes into India and the rest of Asia.


Source: Huw S. Groucutt et. al. 2015

What is the Indian context?  The generally accepted earliest  modern Homo sapiens skeletal record in South Asia are ~35 k old fossils in Sri Lanka. But the tool record indicates presence of modern humans in India much before that. This review suggests that the totality of the tool records favors the theory that Homo sapiens may have entered India during MIS 5 more than a hundred thousand years ago, followed by additional  migrations beginning around fifty thousand years ago. Groucutt et. al. mention that future fossil discoveries from South Asia have the potential to transform ideas about the dispersal of Homo.

As of date the skeletal record of Homo in India consists of just a few fossils . Research by A.R.  Sankhyan and colleagues show that all of these have been found in the Narmada valley at Hathnora and a few km away at Netankheri . At Hathnora, hominin fossils occur in fluvial conglomerate and sand layer. One is a partially preserved calvarium and has been identified as a "robust" late Homo erectus or an archaic Homo sapien. Its cranial capacity is estimated to be 1200 cc to 1400 cc putting in the range of modern humans. It is associated with a collection of heavy duty large flake Acheulian hand axes and cleavers and chopping tools. The other fossil find at Hathnora consists of two clavicles and a partial 9th rib, interpreted to be belonging to a separate population of "short and stocky" archaic Homo sapiens associated with smaller Middle Paleolithic implements.  The cranium has been dated to the Middle Pleistocene ~ 250 k, while the clavicles and 9th rib appear to be younger with an estimated date to be ~150K range. A change in the ecology of this region is seen in the younger deposits based on the faunal content. The large flake tool industry disappears at this point in time . This has been interpreted to mean a migration of the larger robust archaic hominin away from this area based on appearance on this tool typology further north of this region and as far southeastwards to the Bastar region of Bihar.

At Netankheri, a partial femur and a humerus have been found. The femur occupies the same stratigraphic level as the Hathnora calvarium  and has been interpreted as belonging to late Homo erectus -archaic Homo sapien. The humerus though is of the "short and stocky" morphology and interpreted to represent an early modern Homo sapiens. Delicate bone implements have been found along with this fossil.  It is thought to be much younger, dated to be around 75 k, based on its stratigraphic position just below the Baneta Formation which contains Younger Toba Ash layers (ash deposits of the Toba eruption). The researchers interpret this to mean evolution from an archaic to a modern form, population continuity and continuous occupation of this area by this morphologically distinct hominin through the Middle and Late Pleistocene.

In summary, the skeletal and tool record points to presence of two culturally and physically distinct archaic hominin populations occupying the Narmada valley in the Middle Pleistocene. The tool record shows that Homo has been present in India for more than a million years and these physically distinct Middle Pleistocene hominins may be indicating the evolution of distinct hominin lineages in India. Or, was this population differentiation and morphological evolution inherited from an older African population structure, representing separate Middle Pleistocene migration episodes? And how they fit into the broader story of modern Homo sapiens dispersal and occupation of India remains to be worked out.

What is the margin of error on the 150 k date of the "short and stocky" hominin. Could they be younger and represent the early MIS 5 dispersal from Africa ( 100-125 K)?  Of interest are the ~35 K old Homo sapiens fossils from Sri Lanka which are physically distinct from the Netankheri "short and stocky" population. This points to another more recent (MIS 3) migration from Africa. Did these recent arrivals interbreed with the resident archaic hominins?  More fossils from South Asia are needed to fill in these gaps in our understanding of hominin evolution in India.  The authors of the Narmada hominins paper suggest that the "short and stocky" population may have contributed ancestry to later short bodied  populations of South Asia including the pygmies. Certainly, recent genetic work shows interbreeding between modern humans and other differentiated hominins like Neanderthals and Denisovans in Europe and East Asia respectively. Perhaps the Indian story is also one of assimilation of the earlier hominin populations with later human entrants.